DreEX0021932 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43177685-43185609:+
Coord C1 exon
chr19:43177685-43177852
Coord A exon
chr19:43177945-43177982
Coord C2 exon
chr19:43185445-43185609
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTGTTTTTCCACAGTCG
3' ss Score
11.23
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGCGTACTGGGGGTTGCGGGCTCATTTCCCCGGGGAGGCGGAGTCTCTGTATAACTCATTAGAATCGTCCTATCAGAGGACACTTCAGTCGTGTTTAAAGAGCTCGGGCAGCGTGGCGTCACTCCCACAGTCAGACCGCTCGTCCTCCAGCTCGCAAGAAAGCCTTAA
Seq A exon
TCGGCCGCTGTCAAAGTGGTCAGCTGCTCCTGGCAGAG
Seq C2 exon
TTCCTGCGGGCTCAAAATCTTCTGGATCTCCAGCCTCGCTGCAGCGCTCCCGCAGTGATGTGGATGTCAACGCTGCCGCCGGTGCTAAAGCCAGACACAGTGGCCAGGCTGGAGGAGCCGGCAGAGTCACCACAGGCCTGACCCCTGGATCATACGCTTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.439 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(13.3=50.9),PF123333=Ipi1_N=PD(30.8=56.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCCCACAGTCAGACCG
R:
TTGACATCCACATCACTGCGG
Band lengths:
120-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]