BtaEX0009260 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15429692-15430243:+
Coord C1 exon
chr3:15429692-15429821
Coord A exon
chr3:15429922-15430004
Coord C2 exon
chr3:15430164-15430243
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCATCCTTACCTAGAGT
3' ss Score
8.46
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAGCGGGATGAGCGCAGTGTGAAGAGCACAGCTGTGCGGGTAGTAGACTTTGGCAGTGCCACCTTCGACCATGAGCACCATAGTACCATTGTCTCCACCCGCCATTATCGAGCGCCAGAGGTCATTCTTG
Seq A exon
AGTTGGGCTGGTCTCAGCCTTGTGATGTGTGGAGTATAGGCTGTATCATCTTCGAATACTATGTTGGCTTCACCCTCTTCCAA
Seq C2 exon
ACCCATGACAACAGAGAGCATCTAGCCATGATGGAAAGGATCTTGGGTCCCATCCCTTCCCGGATGATCCGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-'17-19,'17-16,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCGCAGTGTGAAGAG
R:
TGGGACCCAAGATCCTTTCCA
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development