MmuEX6072095 @ mm9
Exon Skipping
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:88978867-88979393:+
Coord C1 exon
chr3:88978867-88978996
Coord A exon
chr3:88979080-88979162
Coord C2 exon
chr3:88979314-88979393
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCTCCTCACTACAGAGT
3' ss Score
8.91
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGCGAGATGAGCGCAGTGTAAAGAGCACAGCCGTGCGGGTGGTGGACTTCGGCAGTGCCACCTTTGACCACGAACACCATAGCACCATTGTCTCCACTCGCCATTACCGAGCCCCCGAGGTCATCCTGG
Seq A exon
AGTTGGGCTGGTCACAGCCATGCGATGTATGGAGCATAGGCTGCATCATCTTTGAGTACTACGTTGGCTTCACCCTCTTCCAG
Seq C2 exon
ACCCATGACAACAGAGAGCATCTAGCCATGATGGAAAGGATCCTGGGTCCTGTCCCTTCTCGGATGATCAGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-'14-19,'14-17,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTAAAGAGCACAGCCGTG
R:
TCATCCGAGAAGGGACAGGAC
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: