GgaEX6026215 @ galGal3
Exon Skipping
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1649952-1650857:+
Coord C1 exon
chr25:1649952-1650081
Coord A exon
chr25:1650461-1650543
Coord C2 exon
chr25:1650778-1650857
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCATTGTTTTTTGTTTTTAGAGC
3' ss Score
9.94
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AAGCGGGATGAGCGCAGTGTGAAGAGCACGGCCATCAGAGTGGTGGATTTTGGCAGTGCCACGTTTGACCACGAGCATCACAGCACAATTGTGTCTACCAGGCACTACCGGGCCCCTGAGGTCATTCTGG
Seq A exon
AGCTTGGCTGGAGCCAGCCCTGTGATGTCTGGAGCATCGGCTGCATCATCTTTGAGTATTATGTGGGTTTCACCCTGTTCCAG
Seq C2 exon
ACACACGACAACCGGGAGCACCTGGCCATGATGGAGAGGATCTTGGGGCCAATTCCTTCTCGGATGATCCGGAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCGCAGTGTGAAGAG
R:
AGGAATTGGCCCCAAGATCCT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]