MmuEX6072095 @ mm10
Exon Skipping
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:89174945-89175471:+
Coord C1 exon
chr3:89174945-89175074
Coord A exon
chr3:89175175-89175240
Coord C2 exon
chr3:89175392-89175471
Length
66 bp
Sequences
Splice sites
3' ss Seq
CAGAGTTGGGCTGGTCACAGCCA
3' ss Score
-0.91
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGCGAGATGAGCGCAGTGTAAAGAGCACAGCCGTGCGGGTGGTGGACTTCGGCAGTGCCACCTTTGACCACGAACACCATAGCACCATTGTCTCCACTCGCCATTACCGAGCCCCCGAGGTCATCCTGG
Seq A exon
CCATGCGATGTATGGAGCATAGGCTGCATCATCTTTGAGTACTACGTTGGCTTCACCCTCTTCCAG
Seq C2 exon
ACCCATGACAACAGAGAGCATCTAGCCATGATGGAAAGGATCCTGGGTCCTGTCCCTTCTCGGATGATCAGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-'24-27,'24-26,25-27
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTAAAGAGCACAGCCGTG
R:
TCATCCGAGAAGGGACAGGAC
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types