DreEX0022151 @ danRer10
Exon Skipping
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54659058-54660228:-
Coord C1 exon
chr16:54660099-54660228
Coord A exon
chr16:54659935-54660017
Coord C2 exon
chr16:54659058-54659102
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTGTGTTTCTGTAGAGC
3' ss Score
10.27
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAGCGTGACGAGCGCTCCGTGAACAGCACTGCAGTGAGGATTGTGGATTTCGGCAGCGCCACCTTTGACCACGAGCATCACAGCAGCATCGTCTCCACACGACACTACAGAGCGCCAGAGGTCATTCTGG
Seq A exon
AGCTGGGCTGGAGTCAGCCGTGTGACGTCTGGAGTATCGGCTGTATACTGTTTGAGTTCTACTGCGGATACACACTCTACCAG
Seq C2 exon
ACTCATGACAACAGAGAGCATCTGGCCATGATGGAGCGAATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
PF0006920=Pkinase=FE(8.5=100)
C2:
PF0006920=Pkinase=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGCGCTCCGTGAAC
R:
GTATTCGCTCCATCATGGCCA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]