BtaEX0009619 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37097000-37099348:+
Coord C1 exon
chr19:37097000-37097053
Coord A exon
chr19:37097158-37097211
Coord C2 exon
chr19:37099295-37099348
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACAGTATTCCCTCCATGCAGGGC
3' ss Score
8.28
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTCCTGCTGGCAAAGACGGAGAAGCTGGAGCTCAGGGACCCCCAGGACCTGCT
Seq A exon
GGCCCCGCTGGTGAGAGAGGCGAACAAGGCCCTGCTGGCTCCCCTGGATTCCAG
Seq C2 exon
GGTGAAGCTGGTCCTAGTGGCCCAGCCGGTCCCACTGGAGCTCGTGGTGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103_MULTIEX1-22/41=21-28
Average complexity
C3
Mappability confidence:
94%=92=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.3=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGCAAAGACGGAGAAG
R:
GCACCACGAGCTCCAGTG
Band lengths:
100-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development