RnoEX0022981 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82754502-82754871:+
Coord C1 exon
chr10:82754502-82754555
Coord A exon
chr10:82754656-82754709
Coord C2 exon
chr10:82754818-82754871
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGTTCTCTACGACAGGGT
3' ss Score
8.45
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTCCCGCTGGCAAAGATGGCGAAGCTGGAGCTCAAGGAGCCCCCGGCCCTGCT
Seq A exon
GGTCCTGCTGGTGAGAGAGGTGAACAAGGTCCCGCTGGCTCCCCTGGATTCCAG
Seq C2 exon
GGTCTTCCTGGTCCCGCTGGTCCTCCTGGTGAAGCAGGCAAGCCTGGTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'51-36,'51-34,53-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCGCTGGCAAAGATG
R:
CTGTTCACCAGGCTTGCCTG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]