BtaEX0009623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37097936-37099348:+
Coord C1 exon
chr19:37097936-37098034
Coord A exon
chr19:37098302-37098409
Coord C2 exon
chr19:37099295-37099348
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTTATTGGTTGTCACATAGGGT
3' ss Score
6
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGCGAGAGAGGTTTCCCCGGCGAGCGTGGTGTGCAAGGGCCGCCCGGTCCTGCAGGTCCCCGTGGGGCCAATGGTGCCCCTGGCAACGATGGTGCTAAG
Seq A exon
GGTGATGCTGGTGCCCCTGGAGCCCCCGGTAGCCAGGGTGCCCCTGGCCTTCAAGGAATGCCTGGTGAACGAGGTGCAGCTGGTCTTCCAGGCCCTAAGGGTGACAGA
Seq C2 exon
GGTGAAGCTGGTCCTAGTGGCCCAGCCGGTCCCACTGGAGCTCGTGGTGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103_MULTIEX1-26/41=25-28
Average complexity
C2
Mappability confidence:
95%=93=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGAGAGGTTTCCCCG
R:
CCACGAGCTCCAGTGGGA
Band lengths:
146-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development