GgaEX1016681 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:578901-579841:-
Coord C1 exon
chr7:579743-579841
Coord A exon
chr7:579537-579644
Coord C2 exon
chr7:578901-578954
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAATTTTCGTCACTTTCTAGGGT
3' ss Score
8.54
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTGAAAATGGCATCCCAGGTGAACGTGGTGCACAAGGTCCTCCAGGACCTACTGGAGCAAGAGGTGGGCCAGGTCCTGCTGGCTCCGAAGGTGCCAAG
Seq A exon
GGTCCTCCTGGTCCCCCTGGTGCCCCTGGAGGCACAGGGCTGCCTGGTTTACAGGGAATGCCAGGAGAAAGAGGAGCTTCTGGGAGTCCTGGACCCAAAGGGGATAAG
Seq C2 exon
GGAGAACCTGGTGGTAAAGGTGCTGATGGCCTTCCTGGTGCAAGAGGAGAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(19.4=42.4),PF0139113=Collagen=FE(39.0=100)
A:
PF0139113=Collagen=FE(42.7=100),PF0139113=Collagen=PU(34.3=66.7)
C2:
PF0139113=Collagen=PD(3.7=16.7),PF0139113=Collagen=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAATGGCATCCCAGGT
R:
TCTCCTCTTGCACCAGGAAGG
Band lengths:
149-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]