RnoEX0023187 @ rn6
Exon Skipping
Gene
ENSRNOG00000003357 | Col3a1
Description
collagen type III alpha 1 chain [Source:RGD Symbol;Acc:71029]
Coordinates
chr9:52047552-52048142:+
Coord C1 exon
chr9:52047552-52047650
Coord A exon
chr9:52047737-52047844
Coord C2 exon
chr9:52048089-52048142
Length
108 bp
Sequences
Splice sites
3' ss Seq
CATGTATCTCTTCATTGCAGGGC
3' ss Score
9.63
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
GGTGATTCTGGTGCCCCTGGAGAACGTGGACCCCCTGGAACCGCAGGAACCCCTGGGCTTAGAGGTGGAGCTGGACCCCCTGGGCCTGAGGGAGGAAAG
Seq A exon
GGCCCTGCTGGTCCCCCTGGTCCCCCTGGTACTTCTGGTCCTCCTGGTCTGCAAGGGATGCCAGGAGAGAGAGGAGGTCCTGGGAGTCCTGGCCCAAAGGGTGAAAAG
Seq C2 exon
GGTGAGCCAGGCGGTGCGGGTGCTGATGGAGTTCCAGGAAAGGATGGGCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003357-'46-37,'46-36,47-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCTGGTGCCCCTGGAG
R:
GCCCATCCTTTCCTGGAACTC
Band lengths:
146-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]