GgaEX1016681 @ galGal4
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
Gallus gallus collagen, type III, alpha 1 (COL3A1), mRNA. [Source:RefSeq mRNA;Acc:NM_205380]
Coordinates
chr7:568737-575242:-
Coord C1 exon
chr7:575144-575242
Coord A exon
chr7:574938-575045
Coord C2 exon
chr7:568737-568844
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAATTTTCGTCACTTTCTAGGGT
3' ss Score
8.54
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTGAAAATGGCATCCCAGGTGAACGTGGTGCACAAGGTCCTCCAGGACCTACTGGAGCAAGAGGTGGGCCAGGTCCTGCTGGCTCCGAAGGTGCCAAG
Seq A exon
GGTCCTCCTGGTCCCCCTGGTGCCCCTGGAGGCACAGGGCTGCCTGGTTTACAGGGAATGCCAGGAGAAAGAGGAGCTTCTGGGAGTCCTGGACCCAAAGGGGATAAG
Seq C2 exon
GGTGAAGATGGTAAACCAGGTGTCAATGGTGTCCCAGGAGAACGTGGTGCTCCTGGTCCACAAGGTCCCATGGGTCAGAGAGGCTTACCTGGAGAGCCTGGCAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552_MULTIEX1-27/44=26-38
Average complexity
C3*
Mappability confidence:
83%=91=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAATGGCATCCCAGGT
R:
ATCTCTGCCAGGCTCTCCAG
Band lengths:
207-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]