BtaEX0009652 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013183 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr7:40693617-40699183:-
Coord C1 exon
chr7:40699157-40699183
Coord A exon
chr7:40697766-40697792
Coord C2 exon
chr7:40693617-40693733
Length
27 bp
Sequences
Splice sites
3' ss Seq
CATCCTGTTTTTGTTCCTAGGGC
3' ss Score
11.19
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGACTTCCGGGCCCCAAAGGGGAAAAG
Seq A exon
GGCGCACCAGGAGACTTTGGCCCCCAG
Seq C2 exon
GGAGATCCAGGGCAAGATGGAGCTGCTGGGCCTCCAGGGCCTCCAGGACCCCCTGGGGCCCGGGGCCCTCCTGGCGACACTGGGAAAGATGGCCCCAGGGGAGCACCAGGCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013183-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.1=100)
A:
PF0139113=Collagen=FE(13.1=100)
C2:
PF0139113=Collagen=PD(52.5=82.1),PF0139113=Collagen=PU(35.6=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGGGCCCCAAAG
R:
CATCTTTCCCAGTGTCGCCAG
Band lengths:
117-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development