MmuEX7006736 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51551134-51557587:+
Coord C1 exon
chr11:51551134-51551160
Coord A exon
chr11:51551976-51552002
Coord C2 exon
chr11:51557471-51557587
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTATTTGGTTCTAGGGT
3' ss Score
9.84
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GGACTTCCAGGCCCCAAAGGGGAAAAG
Seq A exon
GGTACACCGGGAGACTTTGGCCCGCGG
Seq C2 exon
GGAGCCCAAGGGCAAGATGGAGTTGCAGGACCACCGGGGCCTCCTGGACCACCTGGGGCCCGGGGCCCTCCTGGTGACACTGGGAAAGATGGCCCCCGAGGAGCGCAAGGCCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'5-13,'5-11,12-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.3=100),PF0139113=Collagen=FE(11.8=100)
A:
PF0139113=Collagen=PD(12.5=77.8),PF0139113=Collagen=FE(11.8=100)
C2:
PF0139113=Collagen=FE(55.9=100),PF0139113=Collagen=PU(21.5=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCAGGCCCCAAAGG
R:
GCCATCTTTCCCAGTGTCACC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types