BtaEX0009654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013183 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr7:40676225-40678270:-
Coord C1 exon
chr7:40678184-40678270
Coord A exon
chr7:40677180-40677257
Coord C2 exon
chr7:40676225-40676263
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTGTCTCTGAAACAGGAG
3' ss Score
6.52
5' ss Seq
GCGGTATGC
5' ss Score
7.62
Exon sequences
Seq C1 exon
GGGGATCGCGGTGTCCCGGGTCGGAAAGGAATGAAAGGCCAGAAGGGCGAGCCGGGACCCCCAGGCCTGGACCAGCCGTGTCCTGTG
Seq A exon
GAGAATCTTAGATGCAGAGGCAGGCGAGGGGCGCCAGGGTCCAGGGGCCTGGCCAGGGGCGGTGGACCCTGCCCTGCG
Seq C2 exon
GGCCCCGATGGACTGCCTGTGCCTGGCTGCTGGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013183_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(40.3=86.2)
A:
NO
C2:
PF0139113=Collagen=PD(7.0=38.5)
Main Inclusion Isoform:
ENSBTAT00000017548fB1843
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAAAGGAATGAAAGGCCA
R:
CTTATGCCAGCAGCCAGGC
Band lengths:
106-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development