MmuEX0012232 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51577074-51579613:+
Coord C1 exon
chr11:51577074-51577160
Coord A exon
chr11:51578583-51578660
Coord C2 exon
chr11:51579575-51579613
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTGTCTTTAATACAGGAA
3' ss Score
6.36
5' ss Seq
GTGGTACGC
5' ss Score
6.83
Exon sequences
Seq C1 exon
GGGGAGCGAGGAGTTCCTGGCCGGAAAGGCGTGAAGGGCCAGAAGGGAGAGCCGGGCCCACCAGGCCTTGACCAGCCATGTCCTGTG
Seq A exon
GAACATCCTCGATGTGGAGGCAGGCAAGGGGCGCCAGGCTCCCCGGGCCTTGTGAAGGGCATCAGGCCCTGCCCTGTG
Seq C2 exon
GGCCCCGATGGGTTGCCTGTGCCTGGTTGCTGGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-'37-40,'37-39,41-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(41.3=89.7)
A:
NO
C2:
PF0139113=Collagen=PD(4.3=23.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAAAGGCGTGAAGGG
R:
CTTATGCCAGCAACCAGGC
Band lengths:
106-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types