BtaEX0009662 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17646717-17656271:+
Coord C1 exon
chr6:17646717-17646743
Coord A exon
chr6:17654050-17654085
Coord C2 exon
chr6:17656218-17656271
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACCAACCCTGCTACACACAGGGA
3' ss Score
5.02
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGACCCCATGGGCTTCCTGGACCAAAG
Seq A exon
GGAGCATCTGGCTTAGACGGAAAGCCAGGATCCCGG
Seq C2 exon
GGTACAGATGGCCCTATGGGACCCCATGGCCCTGCAGGTCCCAAAGGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.3=100),PF0139113=Collagen=FE(11.8=100)
A:
PF0139113=Collagen=PD(9.9=58.3),PF0139113=Collagen=FE(12.1=100)
C2:
PF0139113=Collagen=PD(12.7=44.4),PF0139113=Collagen=FE(31.5=100),PF0139113=Collagen=PU(22.6=77.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATGGGCTTCCTGGA
R:
TTTCTCCTTTGGGACCTGCAG
Band lengths:
76-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development