MmuEX0012252 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130273227-130280273:+
Coord C1 exon
chr3:130273227-130273253
Coord A exon
chr3:130278293-130278328
Coord C2 exon
chr3:130280220-130280273
Length
36 bp
Sequences
Splice sites
3' ss Seq
AACCCTGACACCGTTCCCAGGGA
3' ss Score
6.09
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGGCCCCATGGACTTCCTGGACCAAAG
Seq A exon
GGAGCATCTGGCTTAGACGGAAAGCCAGGATCCCGG
Seq C2 exon
GGTGCAGATGGTCCTATAGGACCCCACGGCCCTGCAGGACCCAAAGGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.0=100),PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=PD(11.8=66.7),PF0139113=Collagen=FE(12.1=100)
C2:
PF0139113=Collagen=PD(1.2=5.6),PF0139113=Collagen=FE(28.3=100)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCCCATGGACTTCCT
R:
CTTTCTCCTTTGGGTCCTGCA
Band lengths:
80-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: