MmuEX0012251 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130273227-130280273:+
Coord C1 exon
chr3:130273227-130273253
Coord A exon
chr3:130275875-130275955
Coord C2 exon
chr3:130280220-130280273
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCATTTGCTTTTGCATTTAGGGT
3' ss Score
8.91
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGGCCCCATGGACTTCCTGGACCAAAG
Seq A exon
GGTGAACCAGGGTTAAATGGTGTTAAAGGATTGAAGGGTGAACCAGGTCAAAAGGGTGACAGAGGACCCCTTGGTCTTCCA
Seq C2 exon
GGTGCAGATGGTCCTATAGGACCCCACGGCCCTGCAGGACCCAAAGGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.0=100),PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=PU(6.9=27.8)
C2:
PF0139113=Collagen=PD(1.2=5.6),PF0139113=Collagen=FE(28.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCATGGACTTCCTGGA
R:
TCTTTCTCCTTTGGGTCCTGC
Band lengths:
79-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: