GgaEX1016611 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37074849-37078991:+
Coord C1 exon
chr4:37074849-37074875
Coord A exon
chr4:37076789-37076869
Coord C2 exon
chr4:37078938-37078991
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTTATACTTTTACATTTAGGGT
3' ss Score
8.12
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGACCTCATGGCCTGCCTGGCCCAAAG
Seq A exon
GGTGAACCAGGGTTAAATGGTCTTAAAGGATTGAAGGGTGAACAAGGTCAAAAGGGTGACAGAGGGCCCCTTGGTCTTCCA
Seq C2 exon
GGTGTAGATGGCCCAGTTGGTCCCCACGGCCCTGCAGGCCCTAAAGGAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521_MULTIEX2-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.9=100),PF0139113=Collagen=FE(9.3=100)
A:
PF0139113=Collagen=PD(7.9=25.9)
C2:
PF0139113=Collagen=FE(19.8=100)
Main Inclusion Isoform:
ENSGALT00000017084fB6350
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCATGGCCTGCCT
R:
TCTGTCTCCTTTAGGGCCTGC
Band lengths:
81-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]