GgaEX7003780 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37074452-37078108:+
Coord C1 exon
chr4:37074452-37074502
Coord A exon
chr4:37074849-37074875
Coord C2 exon
chr4:37078073-37078108
Length
27 bp
Sequences
Splice sites
3' ss Seq
CATGGTATCTTTATTTTCAGGGA
3' ss Score
9.19
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCATAGGACCTCCTGGACCTCCAGGGCCACATGGTCCTCCAGGCCCTATG
Seq A exon
GGACCTCATGGCCTGCCTGGCCCAAAG
Seq C2 exon
GGAGCATCTGGCTTAGACGGAAAGCCAGGACCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'33-33,'33-31,34-33=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(17.4=88.2)
A:
PF0139113=Collagen=FE(12.9=100),PF0139113=Collagen=FE(9.3=100)
C2:
PF0139113=Collagen=PD(12.9=66.7),PF0139113=Collagen=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCCTGGACCTCCA
R:
CCGGGGTCCTGGCTTTCC
Band lengths:
81-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]