BtaEX6030117 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17644090-17656271:+
Coord C1 exon
chr6:17644090-17644140
Coord A exon
chr6:17646717-17646743
Coord C2 exon
chr6:17656218-17656271
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTTTCCGTTTTCAGGGA
3' ss Score
11.96
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTCATAGGCCCACCAGGCCCACCAGGTCCCCACGGCCCACCAGGCCCCATG
Seq A exon
GGACCCCATGGGCTTCCTGGACCAAAG
Seq C2 exon
GGTACAGATGGCCCTATGGGACCCCATGGCCCTGCAGGTCCCAAAGGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282-'25-32,'25-29,26-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.5=100),PF0139113=Collagen=PU(15.4=82.4)
A:
PF0139113=Collagen=FE(10.3=100),PF0139113=Collagen=FE(11.8=100)
C2:
PF0139113=Collagen=PD(12.7=44.4),PF0139113=Collagen=FE(31.5=100),PF0139113=Collagen=PU(22.6=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]