GgaEX7003781 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37072351-37074875:+
Coord C1 exon
chr4:37072351-37072413
Coord A exon
chr4:37074452-37074502
Coord C2 exon
chr4:37074849-37074875
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTTATCCACAGATC
3' ss Score
12.56
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGAGCCAATGGTATGAAAGGCGAAAAAGGAGATGCTGGTTTGCCTGGCGCTCAAGGCCCTTCG
Seq A exon
ATCATAGGACCTCCTGGACCTCCAGGGCCACATGGTCCTCCAGGCCCTATG
Seq C2 exon
GGACCTCATGGCCTGCCTGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.3=100)
A:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(17.4=88.2)
C2:
PF0139113=Collagen=FE(12.9=100),PF0139113=Collagen=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAATGGTATGAAAGGCGA
R:
AGGCAGGCCATGAGGTCC
Band lengths:
79-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]