MmuEX6074088 @ mm10
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130567577-130570335:+
Coord C1 exon
chr3:130567577-130567639
Coord A exon
chr3:130568242-130568292
Coord C2 exon
chr3:130570309-130570335
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGAACATGCAGATC
3' ss Score
8.46
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGTGCCAATGGAGTAAAAGGAGAGAAAGGAGACACCGGTTTGCCAGGTCCTCAGGGGCCTTCT
Seq A exon
ATCATAGGCCCACCAGGCCCTCCAGGTCCCCATGGCCCACCTGGTCCCATG
Seq C2 exon
GGGCCCCATGGACTTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'44-54,'44-49,47-54=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=1.000 C2=0.804
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.0=22.7)
A:
PF0139113=Collagen=FE(23.5=100),PF0139113=Collagen=PU(15.4=82.4)
C2:
PF0139113=Collagen=FE(11.8=100),PF0139113=Collagen=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAATGGAGTAAAAGGAGA
R:
TTGGTCCAGGAAGTCCATGGG
Band lengths:
88-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types