RnoEX6011536 @ rn6
Exon Skipping
Gene
ENSRNOG00000050706 | Col25a1
Description
collagen type XXV alpha 1 chain [Source:RGD Symbol;Acc:1590105]
Coordinates
chr2:235682118-235684924:+
Coord C1 exon
chr2:235682118-235682180
Coord A exon
chr2:235682791-235682841
Coord C2 exon
chr2:235684898-235684924
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTTGACATGCAGATC
3' ss Score
7.54
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGCGCCAATGGAGTAAAAGGAGAGAAAGGAGACTCCGGGTTGCCGGGTCCTCAGGGGCCTTCT
Seq A exon
ATCATAGGCCCACCAGGCCCTCCAGGTCCCCATGGCCCACCTGGTCCCATG
Seq C2 exon
GGACCCCATGGACTTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050706-'30-26,'30-25,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(30.8=100)
A:
PF0139113=Collagen=FE(26.2=100),PF0139113=Collagen=PU(24.6=88.2)
C2:
PF0139113=Collagen=PD(1.6=11.1),PF0139113=Collagen=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCCAATGGAGTAAAAGGA
R:
TTGGTCCAGGAAGTCCATGGG
Band lengths:
88-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]