BtaEX0009823 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:67985131-67995762:-
Coord C1 exon
chr6:67995617-67995762
Coord A exon
chr6:67994358-67994465
Coord C2 exon
chr6:67985131-67985244
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGCCCATTGCTTTTTACAGAAT
3' ss Score
6.63
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AGCTCTCTGTGAGCATTCCAAAGAACGCTGTGAGTCTGTTCTTGGGATTGTGGGTCTACAGTGGCCAGAAGACACAGATTGCAATCAATTTCCAGAGGAAAATGCAGACAATCAAACCTGCCTAATGCCTGATGATGAAGTCGAAG
Seq A exon
AATGCTCACCTAGTCACTTCAAGTGCCGCTCAGGACGGTGTGTTCTGGCTTCCAGAAGATGTGATGGCCAGGCTGACTGTGATGATGATAGTGATGAAGAAAACTGTG
Seq C2 exon
GGTGTAAGGAGAGAGATCTTTGGGAATGTCCATCCAGTAAACAATGTCTGAAGCACACAGTCATCTGTGATGGGTTTCCAGACTGCCCTGATAACATGGATGAAAAAAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PD(35.0=82.0),PF0005713=Ldl_recept_a=PU(2.7=2.0)
A:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGCATTCCAAAGAACGCT
R:
TCATCCATGTTATCAGGGCAGT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development