MmuEX6018025 @ mm9
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72723907-72731225:-
Coord C1 exon
chr5:72731080-72731225
Coord A exon
chr5:72730200-72730307
Coord C2 exon
chr5:72723907-72724020
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAGCATCGCTTTTTTGACAGAAT
3' ss Score
4.01
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACTCCTGTGTGAGCACTCCAAAGAGCGCTGTGAGTCTGTTCTGGGAATCGTTGGCCTGCAGTGGCCTGAAGACACCGACTGCAATCAATTTCCAGAGGAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGATGTGGAAG
Seq A exon
AATGCTCTCCGAGTCACTTCAAATGCCGCTCGGGACGATGCGTTCTGGGCTCCAGGAGATGTGACGGCCAGGCTGACTGTGACGACGACAGTGACGAGGAGAACTGTG
Seq C2 exon
GTTGTAAAGAGAGAGCTCTTTGGGAATGTCCATTTAATAAGCAATGTCTGAAGCATACATTAATCTGCGATGGGTTTCCAGATTGTCCAGACAGTATGGATGAAAAAAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PD(35.0=82.0),PF0005713=Ldl_recept_a=PU(2.7=2.0)
A:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGTGTGAGCACTCCAA
R:
TCCATACTGTCTGGACAATCTGGA
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: