RnoEX6042311 @ rn6
Exon Skipping
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38434024-38441125:+
Coord C1 exon
chr14:38434024-38434169
Coord A exon
chr14:38434890-38434997
Coord C2 exon
chr14:38441012-38441125
Length
108 bp
Sequences
Splice sites
3' ss Seq
GAAGCACTTCTTTTTGACAGAAT
3' ss Score
3.42
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
ACTCCTGTGTGAGCACTCCAAAGAGCGCTGTGAGTCTGTTCTGGGGATCGTAGGCCTCCAGTGGCCTGAAGACACAGATTGCAGTCAATTTCCAGAGCAAAGTTCAGACAATCAAACTTGCCTCCTGCCCAATGAAGACGTGGAAG
Seq A exon
AATGCTCTCCGAGTCACTTCAAGTGCCGCTCGGGACGATGCGTTCTGGGTTCCAGAAGATGCGACGGCCAGGCTGACTGTGATGACGACAGTGACGAAGAGAACTGTG
Seq C2 exon
GTTGTAAAGAGAGAGATCTTTGGGAATGTCCACTCAATAAGCAATGTCTGAAGCATACATTAATCTGTGATGGGTTTCCAGACTGTTCAGATAGTATGGATGAAAAAAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-'24-16,'24-15,25-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PD(35.0=82.0),PF0005713=Ldl_recept_a=PU(2.7=2.0)
A:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGTGTGAGCACTCCAA
R:
TACTATCTGAACAGTCTGGAAACCC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]