GgaEX6035588 @ galGal4
Exon Skipping
Gene
ENSGALG00000014144 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr4:66343349-66350050:+
Coord C1 exon
chr4:66343349-66343494
Coord A exon
chr4:66344845-66344952
Coord C2 exon
chr4:66349937-66350050
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTTGTCACTAACAGAGT
3' ss Score
8.22
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GACATTATGTGTACAGTCTAAGGAACGCTGTGAGTCTGTGCTTGGGATTGTAGGTCTGCAGTGGCCGGAGGATACTGACTGCACTCAGTTTCCAGATGAGAACTCAGACAATCAAACTTGTCTGACACCAGATGAGGACGTAGAAG
Seq A exon
AGTGCTCACCCAGCCACTTCAAATGCCGTTCAGGAAGGTGTGTCCTGGCATCCAGGAGATGTGATGGTCAAGCTGACTGTGAGGATGACAGTGATGAAGACAGCTGTG
Seq C2 exon
GCTGTAAAGAAAGAGGTCTCTGGGAGTGTCCTTTGAAGAAGCTCTGTATCAAGCACACAATGATCTGTGATGGTTTCCCAGATTGCCCTGACATGATGGATGAAAAGAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144-'20-19,'20-17,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139217=Fz=PD(35.0=82.0),PF0005713=Ldl_recept_a=PU(2.7=2.0)
A:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACAGTCTAAGGAACGCTGT
R:
TTCATCCATCATGTCAGGGCA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]