BtaEX0009863 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015253 | COX19
Description
Bos taurus COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109966]
Coordinates
chr25:42309280-42317157:+
Coord C1 exon
chr25:42309280-42309367
Coord A exon
chr25:42316111-42316184
Coord C2 exon
chr25:42317046-42317157
Length
74 bp
Sequences
Splice sites
3' ss Seq
CGTTTCCTCGTCCTGAATAGATG
3' ss Score
7.6
5' ss Seq
AGGGTCCCG
5' ss Score
-7.51
Exon sequences
Seq C1 exon
GAGGACCATGACCTCATCAACGAGGCCCAGCAGGGACAGGAACACAGGATCCCGGTAGTCGAACCGCTGACCGAAGAGGAGCGTGAAG
Seq A exon
ATGACGGCTGAACCCTCTGCCATTGTGTTGCCTCGAGGATAATAAGAAACCCGCCGCGGAGCAAGTGCCTGAGG
Seq C2 exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTCCGGGACAATAATTTTGAAAATGCTTTGTGCAGAAATGAATCAAAAGAGTATCTGGAGTGCAGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015253_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF067478=CHCH=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACAGGAACACAGGATCC
R:
CTTTCCATCCTGCACTCCAGA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development