BtaEX0009864 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015253 | COX19
Description
Bos taurus COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109966]
Coordinates
chr25:42309280-42317157:+
Coord C1 exon
chr25:42309280-42309367
Coord A exon
chr25:42316274-42316475
Coord C2 exon
chr25:42317046-42317157
Length
202 bp
Sequences
Splice sites
3' ss Seq
CCCTGTACCCCCAAGTCCAGGCC
3' ss Score
1.17
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GAGGACCATGACCTCATCAACGAGGCCCAGCAGGGACAGGAACACAGGATCCCGGTAGTCGAACCGCTGACCGAAGAGGAGCGTGAAG
Seq A exon
GCCCATCAGGGGTGGCTCGCCGCTCGACGTGCTCGGCGCTCCCGCGGGGCCTGCTCCGCGATCGGCCGGCCGTCCTGCGTACGGCGCGCGTCGCGCTGGGAGAGTCTGGGTGCCGCCATCATGTCGACAGCTATGAACTTCGGGTCCAAGAGTTTCCAGCCGCGTCCCCCGGACAAGGGCAGCTTCCCGCTCGATCACTTCG
Seq C2 exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTCCGGGACAATAATTTTGAAAATGCTTTGTGCAGAAATGAATCAAAAGAGTATCTGGAGTGCAGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015253_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.464 C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF067478=CHCH=WD(100=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCATGACCTCATCAACGA
R:
CTTTCCATCCTGCACTCCAGA
Band lengths:
199-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development