BtaINT0046221 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42309899-42310487:-
Coord C1 exon
chr25:42310305-42310487
Coord A exon
chr25:42310062-42310304
Coord C2 exon
chr25:42309899-42310061
Length
243 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACCCTGCCTCTCCCCACCAGCTC
3' ss Score
8.65
Exon sequences
Seq C1 exon
GCCAGAATCATGGCCCTGCTGCTCCTGGCGCTGCTGGCGCTGCTGGCGCTCTGGGGGCTGCTTTGCGCCCGGGCCGGTACCCCAGGCCCAGCCCCCCGCTGGCCCCCGGGGCCGCGCCCCCTGCCCCTCGTCGGGAACCTCCACTTGCTGCGGGGGGCACAGCAGGACGAGGCGATGATGCAG
Seq A exon
GTGGGTCCACGGGGCTCTGGAGGCCACCGTCCGCGGGCTGGGGCCAGAGCTGCCAGCAGACAGCAGCAGCTGGCCCTACTCCGCCGTGTGATCCACAGAGACTCACTGCCCACCCCCAGGCCTCAGTCTGCCCATCTGCAGAATGGGCAGGGGAGTGGTGAGGACAGAGGGGACCGGAGGGGCGTGAGGGACCCCAGAGACCTGGGGGTGGGACAGCGGATGGACCCTGCCTCTCCCCACCAG
Seq C2 exon
CTCGGCAAACAGTATGGGCCGGTGTTCACTGTGCATCTTGGGCACCAGAAGACGGTGGTGCTGACCGGCTACGAGGCGGTGAAGGAGGCCCTGGTGGGCACCGGGCAGGAGCTGGCTGGCCGGCCCCCCATTGCCATCTTCCAGCTCATCAATGGAGGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701:ENSBTAT00000023544:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=42.6)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGGGCTGCTTTGC
R:
GCCTCCATTGATGAGCTGGAA
Band lengths:
294-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]