RnoINT0044435 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17386575-17387767:-
Coord C1 exon
chr12:17387696-17387767
Coord A exon
chr12:17386738-17387695
Coord C2 exon
chr12:17386575-17386737
Length
958 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTCCTGTCCGTTCCCACCAGCTC
3' ss Score
8.34
Exon sequences
Seq C1 exon
CCTCGTCCTCTGCCATTCCTGGGGAACCTGCATCTGCTGGGTGTAACCCATCAAGACCGGGCACTGATGGAG
Seq A exon
GTAGGGTGGGCAAAATCCTATGTTATCTCACAGCTTGCATGATGTCTGTGTCCCAGCTCTGACAGGGGAGGAAGTCAGTGGGGGATACAGGATGCCAGAGGCTTGTCCCAGAGAGCAGATGTTGGAAGCAAGAGTGACCTAGGCTCGGTATGTGTAATGTGCACATTCATGAGGGCATGGTTCTATCCCAGGACTGCAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGCTGGGCAGTGCAGCCAAGGGTCAGGGCTCAGGAGTGGTGGGCAGGGTGGGCTCTGGGACAATGAGGAAGAGACTGGCAGGTAGGTCTAGAAGCGACAGAAGTGGGGTGGGGGGGAGCTACAGATTGCACAGCAGTGCCCTTGTCTAGGTAGGGTATTAACTGAGTATGGCTTCCCCCAGAACTTGGAGGTGAAGGTAAGCTAGTTGCACCATCACGAGCCGGGGCTAACTGTCTCAGTGGGGTGGAAGCCCTTGAATTTTGTCCAGGGGACTCTTGCTTGCAGAGAAGTCCACACAGCTGCAGAGCTGGTTTGAAGCGGCCCTGCTCCACCTTTCCTAGGGTGGATCAGGCTAGACTCCAATGTAGCTGCAGGCACTGGGTTGAGAGGTTCAGGCCCTCCCTCGGGGCCCGAAGCCCTCCCTCAGTCTGAGGAGCAGATATGGGGCAGATCCAGCCATCATGGCTCTTGGTGAGAATCACAAAATTCCACTTTCTTGCTTTCAACATTTTTCTCTTTGAAACGGGGAGATGGAAGTTTGAACATTTGAACAGCGCCCCCTCCTGGGGAGACTGGGAAGCCTCTTGGGGGTCCTCTCCAGACCTTAAGCTTCCAGCCTACATAGGGTACGGCTGTGTGTGGTTCTCAGAGGGTGGGTGGAGGCTGTCTGACTCCTGTCCGTTCCCACCAG
Seq C2 exon
CTCTCAGAACGCTACGGGCCGATGTTCACAATCCATCTGGGATCTCAGAAGACCGTGGTGCTGTCGGGCTACGAGGTGGTGAGGGAGGCCTTGGTTGGGACTGGGCACGAGCTAGCCGACCGGCCCCCAATCCCCATCTTCCAGCTCATCCAACGAGGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTCCTCTGCCATTCCT
R:
CCTCGTTGGATGAGCTGGAAG
Band lengths:
230-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]