GgaINT0015021 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2252290-2254228:+
Coord C1 exon
chr14:2252290-2252590
Coord A exon
chr14:2252591-2254065
Coord C2 exon
chr14:2254066-2254228
Length
1475 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ACACCTTGCCTCTTTTTCAGCTT
3' ss Score
9.53
Exon sequences
Seq C1 exon
GATCGCAGAGAACAAACAGAGAGCCAGCTGGCAGGAGCCGAGCGCTGCCGCTGCGCTTTGATTGCTTCTAACACCAAAAACCAGAGTAGTGCTTTAAAAAAAAATGGCTTTCTTGATTTCTTTTATCTCCGATCCTGTATTAATGGGTCTGCTGTGTGCAGCAGTGCTGTTAGCTGTACTCTATTTTTCAACCGGCTCTAAAAATGCAGCGTTTAAATTGCCTCCTGGTCCAACTCCTCTTCCGATCATTGGTAACCTGCATTTGGTGGACATCAGAAGGCAAGATAAGTCACTAATGAAG
Seq A exon
GTAGGACAAAAAACCCAAACCTGGATCCTCGTGCATTTTAAAGCTGCCTGGGCTGTATCAGCGCTACTTTTTTGTCTTTTTTTAATATGAACTAAATAGTAAAGGTGTGGAAACTGCTTTATAATATTTTCTTTCTGGTCTTCTTCAAGCCAACGTCTGTGTTGGTGCAGTGTCATTTATGAGCAATCAACCGTTAAGAAAAACACCTTTGGGTAATATGAGATTTCTTCATGTAATTGTGATGATGTACATGAAGTCTGCGGCGCTTGTGGGACTTTAAATATTAATTTGACAGCTCTGGCACCCAGAAAATGTGGACAGCATTAGGAAAGAACTCGTGTGAATGGAAACCGCTTCCCTCCCTGCGTCCTAGAGAAGCAGTGGGGGAATGTCGTGATGCAGTGACCCCAAATCCAGATGTCCCATTGCAAAACCTATTCCCTCTGGATGAATGGGATGCGCGCTAAAAGCCGGATGGCAGCAGAAGGGTGGGATGGGAAGGCTGAGCTGAGGAACCAGAAGGAGAAGCCTGGAAGCTCTTCCATTGCCTTGCAATCAGAACAGTTTACCCCGCTCATGCTGGAGCTGTGTGTCGGTGTGAGGCGCAACGGGCACAGCCGGCACTGCGGATCGCTCCCTCCTCCAGTGAAGGCTCCATCGCTCCGGTGCTGGGTGAATGCAGGCGGCTGTCGGGTGTGCAGTGCTGGGCTGAGGCTGCATTGCTGCTTTGCCTAATGGGCAGTGCAGGGCTGGGGCAGCTCACCCAGCGTGCTGGGCACATGTTTGCCTTCAGACTGAGAGTTTCTGAATGACCTCTGCGTGCTCTCATTGCTTGCTCTGCTGTATCTGCAGTCACCTATATTTGACTTTAATTTGGGATTAATCCAGAAGAGTTATCCCTGCTCCTCACTCCACAGATAACACCAAAACGGGGTCTGCACTGGGCTGTGGCTGGCTGGGCACACTGCTGGGGTGCTGCTGAGTGGGTGGGGATGCACTCACTCCTCTGCACAGGCTGTGGTTGCATCATGAGGGCTGAGGCTGTGTGCATGCAGCTGGGCAGCACATGGGGCTGCCCACTGTCTTCCTTCGGCCATTGAAGACCCTTCCCTACTGCCCCCATGCTGCTCTGCAGCAGTTGTTGCTCCAGTCCCTTCATCTAGCAGCATCAGGAGCACAGGAGAGGAGCAAGAGCTGTCCTGTGTGACATCACTATTTGCACTATTCTGGTCTTTCTCTGGTTGGCCAACCTGCAGTGCCATCTGAAGTCCAATGTAACCCCAGGTGTTGCACTTATGTCTTTTCACTTTCTCCTTAACAAAGAGACCGGCTTAGCAATGCACTGACGGGGGGTGGGCAATAAACCTGAGCACCCATCCGCTCACCTGTGCAGAACATCCCATGCTCAACCCCGGGGAGTGCTGGGTGAGGGACTTTCCCCCACTGTTGACCATCACACCTTGCCTCTTTTTCAG
Seq C2 exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGGGTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.7=49.1)
A:
NA
C2:
PF0006717=p450=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAACAGAGAGCCAGCTGG
R:
ACCACAACTTTCTGGAAGCCA
Band lengths:
350-1825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]