MmuINT0045126 @ mm10
Intron Retention
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139352617-139354002:+
Coord C1 exon
chr5:139352617-139352829
Coord A exon
chr5:139352830-139353839
Coord C2 exon
chr5:139353840-139354002
Length
1010 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CACCTGTCTGTCCCCACCAGCTC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GAGCTGAGGATTTGCCATCCAGCTGTTCACATGGCTCTGCTGCTCCTGGGTGTCTGGGGGATCTTGCTACTTCTGGGGCTGTGGGGACTGCTCCAGGGCTGCACCCGGAGCCCCTCCCTGGCTCCTCGGTGGCCCCCTGGGCCTCGCCCTCTGCCGTTCCTGGGGAACCTGCATTTGCTGGGTGTGACCCAACAAGACCGGGCACTGATGGAG
Seq A exon
GTAGGGTGGGCGACCCTATTTCATCTCACAGCTCACATGGTGTCTGTGTCCCAGCACTGACAAGGGAAGCCAGGGGGGATTCAGGATGCCAGAGGCTTGTCCCAGAGAGCAGATGTTGGAAGCAAGAGTGGCCTAGGCTAGGGAGATAGCTCATTGTAGTGTGTTTGCTTAGCATTCACAAGAGCCTGGTTCTATCCCAGAATTGCAAATAAAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACGTAGGTAGGTAGGTAGGTAGGTAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGGACAGGACAGCAGCCAAGGGTCAGGGCTCAGGATTGGTGAGCAGGGTGGGCTCTGGAACAATGAGGAAGAGACTGGCAGGTGTGTCTAGAAGTGTTGGAAATGTGGCAGGGCAGCAGTGCCCTTGTCTGGGTAGGGTATTAGCTAGGTACGGCTTCTCCCTAGAACTCAGACATGAAGGTAAGCTGGCTGCACCGCCACTGGCCAGGGTTAACTGGCTCAGTAGGGTGGAGGTCCTTGAATTTTGTCTGGGGACTCTTGTTTGCAGAGAAGTCCACACAACTGCAGAGCTAGCTTGAAGTGGCTCTGCCACACCTTTCCTAGGGTGGGTCAGGCTAGACTCCGACGTGGCTGCCGGCACTAGGTTCAGAGGCTCAGGCCCTACCTCGGGGCCCAGTCTGAGGAGCAGAGATCAGGCAGATCCAGCCATGGCTCTGGGTGAGACCCACAAATTCCACTCTAGCTTTCTCATTTTTTTTCAACGGTTTCTCTTTGAAGTGGGGTGATGGAAGTTTGAACATTTGAACAGCGCCCCCTCCTGGGGAGACTGGAGGGGCTCTTGGGGTTCTCTCCAGCTCTTAAGCTTCCAGCCTACATACAGTACGGCTGTATGTAACTCTTAGAGGGTGGGTGGAGGCTGCCTGTCTGACACCTGTCTGTCCCCACCAG
Seq C2 exon
CTCTCAGAACGCTACGGGCCCATGTTCACAATCCATCTGGGATCTCAGAAGACCGTGGTGCTGTCGGGCTATGAGGTGGTGAGGGAGGCCTTGGTTGGAACCGGGCATGAGCTAGCCGACCGGCCCCCAATTCCCATCTTCCAGCACATCCAGCGAGGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541:ENSMUST00000200478:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=42.6)
A:
NA
C2:
PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCTGTTCACATGGCT
R:
GCTGGAAGATGGGAATTGGGG
Band lengths:
343-1353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types