BtaINT0046223 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42309259-42309633:-
Coord C1 exon
chr25:42309484-42309633
Coord A exon
chr25:42309417-42309483
Coord C2 exon
chr25:42309259-42309416
Length
67 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAGCCGCTCTCCACCCCCAGGCC
3' ss Score
8.47
Exon sequences
Seq C1 exon
GCGTCTTCTTCTCCTCAGGCCCACGCTGGCGGGCCGCCCGCCAGCTCACCGTACGTGCCCTCCACGGCCTGGGTGTGGGGAGGGCGCCCGTGGCCAACAAGGTCTTGCAGGAGCTGAGGTGCCTCACGGCGCAGCTGGACAGCTACGAAG
Seq A exon
GTGAGTGGGGGCCTGGGCGCCTCTGCCCCGCGCGTCCCACAGCCCTGAAGCCGCTCTCCACCCCCAG
Seq C2 exon
GCCGGCCCTTCCCGCTGGCCCTGCTCCGCTGGGCTCCCTCCAACATCACCTTCACGCTCCTCTTCGGTCAGCGGTTCGACTACCGGGATCCTGTGTTCCTGTCCCTGCTGGGCCTCGTTGATGAGGTCATGGTCCTCCTGGGGAAGCCGAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701:ENSBTAT00000023544:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCAACAAGGTCTTGCAG
R:
AGGGACAGGAACACAGGATCC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]