GgaINT0016194 @ galGal3
Intron Retention
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2270733-2271135:-
Coord C1 exon
chr14:2270986-2271135
Coord A exon
chr14:2270891-2270985
Coord C2 exon
chr14:2270733-2270890
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCGATTTGCGCCATTTCCAGGTG
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTGTGTTCTTCTCTTCCCAAGAGCTCTGGAAGACAACACGGAGGTTCACCTTGGCGGTTATGCGGGATCTGGGCATGGGGAAGCGGCTTGCGGAGGAAAGGATGCTCGAGGAGCTTCAGTTTCTCATTGAGCTGATCAAATCCTTTCAAG
Seq A exon
GTGAGCTGGAGTGTTTTATATTACTTTGCAGAGCCACTGCAAAGACCTCAGGGTTGCTCTGGAAGACAAATACAGGCGATTTGCGCCATTTCCAG
Seq C2 exon
GTGGGCCATTCCGACTTCGGCTTTTGAATGCGGCCCCCACCAACATCACCTTTGCCATGCTCTTTGGGAGAAGGTTTGACTACGGAGACCCAACGTTTGTCACTCTGCTACGACTCATCGATGAAGTTATGCTCCTTCTTGGCTCCCCATTCCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050:ENSGALT00000006446:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(30.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAAAGGATGCTCGAGGA
R:
AGCAGAGTGACAAACGTTGGG
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]