RnoINT0044437 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17385930-17386309:-
Coord C1 exon
chr12:17386160-17386309
Coord A exon
chr12:17386088-17386159
Coord C2 exon
chr12:17385930-17386087
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGTCTTCCTCCGACCTCCAGGCC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GCATCTTCTTTTCTTCTGGAGTTCACTGGAAGGTGGCTCGCCAGTTCACGGTGCGCACACTGCAGAGCCTGGGTATACGACAGCCACCCATGGTGGGCAAGGTGCTGCAGGAGCTGGTCTGTCTTAAAGGGCAGCTGGACAGCTATGGAG
Seq A exon
GTGAGTGGGGGACCAGGTTGCCCCTGCCCGGCGTGTATGCCCACCTGAGGCCTGTCTTCCTCCGACCTCCAG
Seq C2 exon
GCCAGCCCTTTCCTCTGACCCTGCTGGGTTGGGCACCGTGCAACATCACCTTCACACTCCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGTTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGCTCACCTGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCCTGGGTATACGA
R:
GGATCCTGGTAGTCAAAGCGC
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]