GgaINT0015023 @ galGal3
Intron Retention
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2262059-2262439:+
Coord C1 exon
chr14:2262059-2262208
Coord A exon
chr14:2262209-2262281
Coord C2 exon
chr14:2262282-2262439
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTCCTCCTCCCATTGCAGGGG
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
Seq A exon
GTGAGCAGGAGCCCACTGTGGTGCTCTGCAGCATCCACGTCACTCTGACACTGCTCTCCTCCTCCCATTGCAG
Seq C2 exon
GGGAACCTTTCAGCCTCAGGTCCTTCAGCATTGCTCCAATCAACATCACCTTCCTCATGCTCTTTGGGGACAGGTTTGACTATAAGGATCCAACATTTCTCACTCTCCTAAGACTCATAGATGAAGTTATGGTTCTTCTGGGATCTCCGTACTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGCGATCTGTGGAGGAC
R:
TTGGAGCAATGCTGAAGGACC
Band lengths:
176-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]