MmuINT0045128 @ mm10
Intron Retention
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139354240-139354622:+
Coord C1 exon
chr5:139354240-139354389
Coord A exon
chr5:139354390-139354459
Coord C2 exon
chr5:139354460-139354622
Length
70 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCTTTCTCCCTGACCTACAGGCC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GCATTTTCTTTTCTTCTGGAGCTCGCTGGAGGGCGGGTCGCCAATTCACGGTGCGCACACTGCAGAGCCTGGGTGTGCAACAGCCATCCATGGTGGGCAAGGTGCTGCAGGAGCTGGCCTGTCTTAAAGGACAGCTGGATAGCTATGGAG
Seq A exon
GTGAGTGGGGGACCGGGATGCCCCTGCCCAGCATCTATTCCCACCTGAGGCCTTTCTCCCTGACCTACAG
Seq C2 exon
GCCAGCCCCTCCCCCTGGCGCTGCTGGGTTGGGCACCCTGCAACATCACCTTCACACTTCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGCTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGGTCACCTGGCATACAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541:ENSMUST00000200478:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGCAACAGCCATCCAT
R:
GGATCCTGGTAGTCAAAGCGC
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types