BtaEX0010015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007146 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr4:67550290-67558771:+
Coord C1 exon
chr4:67550290-67550421
Coord A exon
chr4:67556404-67556502
Coord C2 exon
chr4:67558598-67558771
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCTCCCAACCTAGTTA
3' ss Score
8.49
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
ATCATAGAGGGCTACCCATCATTCCTGTTCCAAATTGGCTTGTTGGATGAGCAGGAGAAAAAGTACTTCCAGAAGCAGTGCAATGACTGCGTGAAATTCATCCGCCAGGAGAAGTGGCTTCAAGCCTTTGAA
Seq A exon
TTACTGGACCGACTACTAGACGGCGGCTTAATAAGCGAACCTTCTTACTTCCAGAATGTTACAGGATGTTCTAATTACTACAATCTTTTACTGTGCACG
Seq C2 exon
GAGCCTGAGGATCAAGGTTACTACGGGAAATTTTTGTCCCTCCCCCACGTGAGACAAGCCATCCACGTGGGAAACCAGACTTTTAGTGATGGAGCCAAAGTTGAAAAGTACTTGCGAGAAGATACAGTCAAGTCAGTGAAACCATGGTTAACTGAAATCATGAATAATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007146_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(10.6=100)
A:
PF0045017=Peptidase_S10=FE(7.9=100)
C2:
PF0045017=Peptidase_S10=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTTGTTGGATGAGCAGG
R:
GTCTGGTTTCCCACGTGGATG
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development