RnoEX6013626 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84080982-84087486:-
Coord C1 exon
chr4:84087355-84087486
Coord A exon
chr4:84082669-84082767
Coord C2 exon
chr4:84080982-84081155
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTTCTCTGACCTAGGTC
3' ss Score
11.06
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
ATTATAGGAGGGTACGCGACATTCCTGTATGAAGTTGGCTTGTTGGATGAACAGCAGCGAAGGCACTTCCGGAAGCAGTGTCGAAAGTGCATAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAA
Seq A exon
GTCCTGGATGAACTGCTGGATGGAGATTTAACAGCTGGTCCATCTTTCTTCCAGAATGTGACAGGATGCACCAATTACTACAACATTTTACAGTGCACG
Seq C2 exon
GAACCCGAGGACCAAAGTTACTTTTCGAAATTCTTGTCACTCCCACAAGTGAGACAAGCCATCCATGTGGGAAACCGGAACTTCAGTGATGGTGCTGAGGTTGAGAAGTACCTACGAGAGGACACAGTGAAGTCAGTGAAACCCTGGCTAGCTGAGATCATGAATTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172-'20-18,'20-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(10.6=100)
A:
PF0045017=Peptidase_S10=FE(10.9=100)
C2:
PF0045017=Peptidase_S10=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGTTGGATGAACAGCA
R:
CCCACATGGATGGCTTGTCTC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]