DreEX6040525 @ danRer10
Exon Skipping
Gene
ENSDARG00000056480 | cpvl
Description
carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
Coordinates
chr16:20702467-20706926:+
Coord C1 exon
chr16:20702467-20702598
Coord A exon
chr16:20706545-20706643
Coord C2 exon
chr16:20706753-20706926
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACATCCCTTTTGCTCCACAGGTG
3' ss Score
11.3
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGCTGGGAGGCTATGCAGATTTTCTCTATCAGACGGGTCTGGTGGATGAACTGCAGAGGCAGCATGTGAAGATGCAGACAGATGCAGGAGTCAAACTGATTCAGGAGCAGCGATGGGTGGAGGCCTTCCAG
Seq A exon
GTGTTTGACAGCTTACTGAATGGGGATCTTGTTCCTTATCCTTCATACTTCCAGAACGTCACTGGTTGCACCAACTACTTCAACTACATGCAGTGTCAG
Seq C2 exon
GAACCTCCAGATCAGGAGTATTTTTCTTCATTCGTGACTCTACCAGAGGTTCGACGCTCCATCCATGTTGGGAATCTGACCTTCAACGATGGCTCAGATGTGGAGAAACATCTGCTTCAGGATGTCATGAAGTCCATCAAACCCTGGTTGGGCGTCCTGATGGAGAACTATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056480-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(10.6=100)
A:
PF0045017=Peptidase_S10=FE(7.9=100)
C2:
PF0045017=Peptidase_S10=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGTGGATGAACTGCAG
R:
ATTCCCAACATGGATGGAGCG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]