Special

MmuEX6004419 @ mm10

Exon Skipping

Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53925133-53932534:-
Coord C1 exon
chr6:53932412-53932534
Coord A exon
chr6:53926810-53926908
Coord C2 exon
chr6:53925133-53925306
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCTCTCTGACCTAGATC
3' ss Score
9.97
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
TCTTATGCAGGGAAATATGTTCCGGCCCTAGCACACTATATCCACTCCCTCAACCCCGTGCGGAAGTTCAAGATTCGCCTAAAAGGAATTGCCATTGGAGATGCATACACTGATCCTGAATCG
Seq A exon
ATCCTGGATAAGCTGCTAGATGGAGATGTAACAACTGGTTCATCTTTCTTCCAGAATGTGACAGGATGTACCAATTACTACAACATTTTACAGTGCACG
Seq C2 exon
GAACCCAAGGAGCAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCACCTGCGAGAGGACACAGTGAAGTCGGTGAAGCCCTGGCTGTCTGAGATCATGAATTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955-'22-19,'22-17,24-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0045017=Peptidase_S10=FE(13.7=100)

							
A:
PF0045017=Peptidase_S10=PD(9.5=57.6),PF0045017=Peptidase_S10=PU(16.4=87.9)

							
C2:
PF0045017=Peptidase_S10=FE(14.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000145288





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000131462, ENSMUSP00000144942
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr7:29066023-29066121 
HIGH PSI
HsaEX0017095
(CPVL)
Human
(hg19)
chr7:29105639-29105737 
HIGH PSI
HsaEX0017095
(CPVL)
Rat
(rn6)
chr4:84082669-84082767 
HIGH PSI
RnoEX6013626
(Cpvl)
Cow
(bosTau6)
chr4:67556404-67556502 
ALTERNATIVE
BtaEX0010015
(CPVL)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr16:20706545-20706643 
HIGH PSI
DreEX6040525
(cpvl)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCCGTGCGGAAGTTCAAGATT

				
R: 
CTTCTCAACCTCAGCACCGTC

				
Band lengths: 
177-276

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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