BtaEX0010208 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1033073-1041258:-
Coord C1 exon
chr27:1041079-1041258
Coord A exon
chr27:1036429-1036473
Coord C2 exon
chr27:1033073-1033231
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTGTCTTTTTACTTGTAGGTA
3' ss Score
10.42
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTCACGCCTGCCGCCAGCCTGAAACGCCAGCCCATGCAGATGTGAGAGCCATTGACCTCCCCACCTTTGGCTACACCTTGGTATACACCTGCCATCCGGGATTCTTCCTCGCAGGTGGATCTGAGCACAGGACGTGTAAAGCAGACATGAAATGGACAGGGAAGTCCCCTGTCTGTAAAA
Seq A exon
GTAAAGGAGTGAGAGAAGTTAATGAAACAGTTACTAAAACTCCAG
Seq C2 exon
TTCCTTCAGATGTGTTTTTCATCCATTCGGTGTGGAAGGGATATTACGAATATTTAGGGAAAAGACAGCCTGCGACCCTAACTGTCGATTGGTTCAATGCAACTAGCAGCAAAGTGAATGCGACGTTCACTGACTCCCAAGGGGAGCTGAAGTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'64-65,'64-64,65-65
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACCTGCCATCCGGGATT
R:
CCCTTCCACACCGAATGGATG
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development