GgaEX0024094 @ galGal3
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92985124-92989901:+
Coord C1 exon
chr3:92985124-92985303
Coord A exon
chr3:92986932-92986976
Coord C2 exon
chr3:92989740-92989901
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTGTCTTTTTACTTGTAGGTA
3' ss Score
10.42
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTCATGCATGCAGGCAGCCAGAGACACCAGCACATGTAGATGTGAAAGCAATAGATCTTCCTACTTTAGGGTATACTTTGGTGTATACCTGTCAGCCAGGATTTTTTCTTGCTGGTGGATCAGAGCATCGAACATGTAAGCCGGATATGAAATGGACAGGAAAATCACCTATTTGTAAAA
Seq A exon
GTAAAGGAGTGAGAGAAGTTAATGAAACAATAACTAAAACTCCAG
Seq C2 exon
TTCCATCAGATGTGTTTTTTATAAATTCACTGTGGAAAGGATTTTATGAATATCTAGGAAAAAGACAGCCTGCTACTCTTACTGTTGATTGGTTTAACACTACAAGCAGCAAAGTGAATGCCACATTCACTGAAGCATCCAGCCTACAACTCAAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGAACATGTAAGCCGGA
R:
ACAGTAAGAGTAGCAGGCTGTCT
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]