RnoEX0024841 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78831327-78835809:+
Coord C1 exon
chr16:78831327-78831506
Coord A exon
chr16:78832747-78832791
Coord C2 exon
chr16:78835648-78835809
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTTGTCTTTTTACTTGTAGGTA
3' ss Score
10.42
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCCATGCCTGCCGGCAGCCAGAGACCCCAGCGCATGCAGATGTGAGAGCCATCGATCTTCCAGCTTTTGGCTACACCTTAGTCTACACCTGTCATCCAGGATTTTTCCTTGCTGGCGGATCTGAGCACAGGACGTGTAAAGCAGACATGAAATGGACAGGAAAGTCACCTGTTTGTAAAA
Seq A exon
GTAAAGGAGTGAGAGAAGTTAATGAAACAGTTACTAAAACTCCAG
Seq C2 exon
TTCCTTCTGATGTATTTTTCATCAACTCGGTGTGGAAGGGATATTATGAATATTTAGGCAAGAGACAGCCGGCGACTCTCACTGTGGACTGGTTTAATGCAACCAGCAGCAAGGTCAATGCGACCTTCACCGCAGCCTCACAGGTGCAGCTGGAGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGACGTGTAAAGCAGACA
R:
ACCAGTCCACAGTGAGAGTCG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]