BtaEX0010594 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018240 | CYP2S1
Description
Bos taurus cytochrome P450, family 2, subfamily S, polypeptide 1 (CYP2S1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100366]
Coordinates
chr18:50655123-50658600:+
Coord C1 exon
chr18:50655123-50655288
Coord A exon
chr18:50657540-50657689
Coord C2 exon
chr18:50658440-50658600
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAGCCTAGCCGTCTGTGCAGGGG
3' ss Score
0.81
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTGAGTAAGAAGTACGGACCAGTGTTCACCGTGTACCTGGGACCCTGGCGGCGCGTGGTGGTCCTGGTTGGGCATGAGGCTGTGCAGGAGGCCCTGGGAGGTCAGGCCGAGGAGTTCAGCGGGCGGGGGACGGTGGCAACGCTGGACGGGACCTTTGATAGCCACG
Seq A exon
GGGTGTTCTTCTCCAACGGGGAGCGATGGAGGCAGCTGAGGAAGTTCACCACACTGGCCCTGCGGGACCTAGGCATGGGGAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGCCCGCTGTCTGGTGGAGGCGCTGCAGGGGACAAAAG
Seq C2 exon
GACGGCCGTTTGACCCCTCCCTGCTGCTGGCCCAGGCCACCTGCAACATCATCTGCTCCCTAGTCTTCGACCTCCGCCTCCCCTACGACAATGAGGAGTTCCAGGCTGTGGTCCGGGCGGCTGGCGGCATCGCCGTGGGGGTCAGCTCCCCGTGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018240-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(11.4=100)
C2:
PF0006717=p450=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTTCACCGTGTACCTGG
R:
GCCTGGAACTCCTCATTGTCG
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development