MmuEX0013359 @ mm9
Exon Skipping
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:26594457-26600069:-
Coord C1 exon
chr7:26599904-26600069
Coord A exon
chr7:26596621-26596770
Coord C2 exon
chr7:26594457-26594617
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAATCTAGCCTTCTATGCAGGAG
3' ss Score
2.11
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTAAGTAAGAAGTATGGGCCTGTGTTCACGGTATACCTGGGCCCCTGGCGCCGCGTGGTGGTCCTGGTTGGACATGATGCTGTAAGAGAAGCCTTGGGAGGTCAGGCTGAGGAATTCAGCGGGCGTGGAACATTGGCAACGCTGGACAAGACCTTTGATGGTCACG
Seq A exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTCGCTCTACGGGACCTGGGCATGGGCAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGTGCAGAGTCTGGTGGAGGCTTTCCAGAAGACAGAAG
Seq C2 exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCCACCTCTAATGTCGTCTGTTCCCTTGTCTTTGGCATCCGTTTGCCCTATGACGATAAAGAGTTCCAGGCTGTGATCCAGGCAGCAAGTGGTACCTTGTTAGGGATCAGCTCTCCATGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
PF0006717=p450=PU(27.5=96.2)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCTGTGTTCACGGTATA
R:
TCGTCATAGGGCAAACGGATG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: