RnoEX0025930 @ rn6
Exon Skipping
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82603274-82608605:-
Coord C1 exon
chr1:82608440-82608605
Coord A exon
chr1:82605277-82605426
Coord C2 exon
chr1:82603274-82603434
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAATCTGGCTTTCTATGCAGGAG
3' ss Score
7.37
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTAAGTAAGAAGTATGGGCCTGTGTTCACGGTACACCTGGGCCCCTGGCGCCGCGTGGTGGTCCTGGTTGGACATGATGCTATTCGAGAAGCCCTGGGAGGTCAGGCTGAGGAATTCAGCGGGCGGGGAACGTTGGCAACTCTGGACAAGACCTTTGATGGTCACG
Seq A exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTGGCTCTACGGGACCTGGGCATGGGCAAGCGAGAGGGCGAGGAGCTGATCCAGGAGGAGGTGCAGAATCTGGTGAAGGCTTTCCAGCGGACGGAAG
Seq C2 exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCTACCTCTAATGTTGTCTGTTCCCTCATCTTTGGCATCCGTTTGCCCTATGAAGATAAAGAGTTTCAGGCTGTGATCCAGGCAGCAAGTGGGACCTTGTTGGGGATCAGCTCTCCATGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATTCGAGAAGCCCTGGG
R:
ATGGAGAGCTGATCCCCAACA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]